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The publications

Publications that appeared in 2008 from theses in the Doctoral School "Sciences du Végétal".

The names of our doctoral students/doctors are underligned.



Allen AE, LaRoche J, Maheswari U, Lommer M, Schauer N, Lopez PJ, Finazzi G, Fernie AR, Bowler C (2008). Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences USA 105: 10438-10443.


Azimzadeh J, Nacry P, Christodoulidou A, Drevensek S, Camilleri C, Amiour N, Parcy F, Pastuglia M, Bouchez D (2008). Arabidopsis TONNEAU1 proteins are essential for preprophase band formation and interact with centrin. Plant Cell 20: 2146-2159.


Bathellier C, Badeck F, Couzi  P, Harscoët S, Mauve C, Ghashghaie J (2008). Divergence in δ13C of dark respired CO2 and bulk organic matter occurs during the transition between heterotrophy and autotrophy in Phaseolus vulgaris L. plants. New Phytologist 177(2): 406-418


Bedhomme M, Jouannic S, Champion A, Simanis V, Henry Y (2008). Plants, MEN and SIN. Plant Physiology and Biochemistry 46: 1-10.


Benhamed M, Martin-Magniette M, Taconnat L, Bitton F, Servet C, et al (2008). Genome scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant Journal 56: 493-504.


Berveiller D, Damesin C (2008). Carbon assimilation by tree stems: potential involvement of phosphoenolpyruvate carboxylase. Trees - Structure and Function 22: 149-157.


Blein T, Pulido A, Vialette-Guiraud A, Nikovics K, Morin H, Hay A, Johansen IE, Tsiantis M, Laufs P (2008). A conserved molecular framework for compound leaf development. Science 322: 1835-1839.


Boualem A, Fergany M, Fernandez R, Troadec C, Martin A, Morin H, Sari M, Collin F, Flowers M, Pitrat M, Purugganan M, Dogimont C, Bendahmane A (2008). A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons. Science 321: 336-338.


Boualem A, Laporte P, Jovanovic M, Laffont C, Plet J, Combier J, Niebel A, Crespi M, Frugier F (2008). Microrna166 Controls Root and Nodule Development in Medicago Truncatula. Plant J 54: 876-887.


Boughammoura A, Matzanke B, Böttger L, Reverchon S, Lesuisse E, Expert D, Franza T (2008). Differential role of ferritins in iron metabolism and virulence of the plant pathogenic bacterium Erwinia chrysanthemi. Journal of Bacteriology 190: 1518-1530.


Boulay C, Abasova L, Six C, Vass I, Kirilovsky D (2008). Occurrence and function of the orange carotenoid protein in photoprotective mechanisms in various cyanobacteria. Biochimica Biophysica Acta 1777: 1344-1354.


Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret J-P, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kroger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jezequel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Secq M-PO-L, Napoli C, Obornik M, Parker MS, Petit J-L, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV (2008). The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456(7219): 239-244.


Braun N, Wyrzykowska J, Muller P, David K, Couch D, Perrot-Rechenmann C, Fleming A (2008). Conditional Repression of Auxin Binding Protein1 Reveals That It Coordinates Cell Division and Cell Expansion During Postembryonic Shoot Development in Arabidopsis and Tobacco. Plant Cell 20: 2746-2762.


Brocard L, d'Erfurth I, Kondorosi A, Ratet P (2008). Reverse Genetic Approaches in Medicago Truncatula." In Handbook of New Technologies for Genetic Improvement of Legumes. P. B. Kirti. New York, C.R.C Press, Boca Raton 353-369.


Caut S, Angulo E, Courchamp F (2008). Caution on isotopic model use for analyses of consumer diet: effect of discrimination factors. Canadian Journal of Zoology-Revue Canadienne de Zoologie 86: 438-445.


Caut S, Angulo E, Courchamp F (2008). Dietary shift of an invasive predator and endangered prey: rats, seabirds and sea turtles. Journal of Applied Ecology 45(2): 428-437.


Caut S, Angulo E, Courchamp F (2008). Discrimination factors (∆15N and ∆13C) in an omnivorous consumer: effect of diet isotopic ratio. Functional Ecology 22(2): 255–263.


Caut S, Fossette S, Guirlet E, Angulo E, Das K, Girondot M, Georges J-Y (2008). Isotope analysis reveals foraging area dichotomy for Atlantic leatherback turtles. PLoS One 3(3): e1845.


Cerovic Z, Moise N, Agati G, Latouche G, Ben Ghozlen N, Meyer S (2008). New portable optical sensors for the assessment of winegrape phenolic maturity based on berry fluorescence. Journal of Food Composition and Analysis  21: 650-654.


Collemare J, Billard A, Boehnert HU, Lebrun MH (2008). Biosynthesis of secondary metabolites in the rice blast fungus Magnaporthe grisea: the role of hybrid PKS-NRPS in pathogenicity. Mycological Research 112: 207-215.


David P, Sevignac M, Thareau V, Catillon Y, Kami J, Gepts P, Langin T, Geffroy V (2008). BAC end sequences corresponding to the B4 resistance gene cluster in common bean: a resource for markers and synteny analyses. Molecular Genetics and Genomics 280(6): 521-533.


de Vienne D, Giraud T, Martin O (2008). In response to comment on ‘A congruence index for testing topological similarity between trees’. Bioinformatics 25: 105-151.


Degrave A, Fagard M, Perino C, Brisset M, Gaubert S, Laroche S, Patrit O, Barny M (2008). Erwinia amylovora type three-secreted proteins trigger cell death and defense responses in A. thaliana. Molecular Plant Microbe Interaction 21: 1076-1086.


Delmas V, Bonnet X, Girondot M, Prévot-Julliard A-C (2008). Varying hydric conditions during incubation influence egg water exchange and hatchling phenotype in the red-eared slider turtle. Physiological and Biochemical Zoology 81(3): 345-355.


Delmas V, Prévot-Julliard A-C, Pieau C, Girondot M (2008). A mechanistic model of temperature-dependent sex determination in a Chelonian, the European pond turtle. Functional Ecology 22: 84-93.


Devaux C, Klein EK, Lavigne C, Sausse C, Messean A (2008). Environmental and landscape effects on cross-pollination rates observed at long distance among French oilseed rape Brassica napus commercial fieldsJournal of Applied Ecology 45: 803-812.


Eglin T, Maunoury Danger F, Fresneau C, Lelarge C, Pollet B, Lapierre C, François C, Damesin C (2008). Biochemical composition is not the main factor influencing variability in carbon isotope composition of tree rings. Tree Physiology 28: 1619-1628.


Expert D, Boughammoura A, Franza T (2008). Siderophore-controlled iron assimilation in the enterobacterium Erwinia chrysanthemi: Evidence for the involvement of bacterioferritin and the Suf Fe-S cluster assembly machinery. Journal of Biochemical Chemistry 283: 36564-36572.


Garnier A, Pivard S, Lecomte J (2008). Measuring and modelling anthopogenic secondary seed dispersal along road verges for feral oilseed rape Basic and Applied Ecology 9: 533-541.


Giraud T, Refregier G, de Vienne DM, Le Gac Ma, Hood ME (2008). Speciation in fungi Fung. Genet. Biol. 45: 791-802.


Giraud T, Yockteng R, Marthey S, Chiapello H, Jonot O, Lopez-Villavicencio M, de Vienne DM, Hood ME, Rrefrégier G, Gendrault-Jacquemard A, Wincker P, Dossat C (2008). Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum Molecular Ecology Resources 8: 387-392.


Gonzalez-Melendi P, Uyttewaal M, Morcillo C, Hernandez-Mora J, SF F, Budar F, Lucas M (2008). A light and electron microscopy analysis of the events leading to male sterility in Ogu-INRA CMS of rapeseed (Brassica napus). Journal of Experimental Botany 59: 827-838.


Guermonprez H, Smertenko A, Crosnier M-T, Durandet M, Vrielynck N, Guerche P, Hussey PJ, Satiat-Jeunemaitre B, Bonhomme S (2008). The POK/AtVPS52 protein localizes to several distinct post-Golgi compartments in sporophytic and gametophytic cells. Journal of Experimental Botany 59: 3087-3098.


Guirlet E, Das K, Girondot M (2008). Maternal transfer of trace elements in leatherback turtles (Dermochelys coriacea) of French Guiana. Aquatic Toxicology 88(4): 267-276.


Hematy K, Hofte H (2008). Novel receptor kinases involved in growth regulation. Current Opinion in Plant Biology 11: 321-328.


Héraudet V, Salvaudon L, Shykoff JA (2008). Trade-off between latent period and transmission success of a plant pathogen revealed by phenotypic correlations. Evolutionary Ecology Research 10(6): 913-924.


Heyno E, Klose C, Krieger-Liszkay A (2008). Origin of cadmium-induced reactive oxygen species production: mitochondrial electron transfer versus plasma membrane NADPH oxidase. New Phytologist 179: 687-699.


Higgins JD, Vignard J, Mercier R, Pugh AG, Franklin FC, Jones GH (2008). AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis. Plant J 55(1): 28-39.


Hulin V, Girondot M, Godfrey MH, Guillon J-M (2008). Mixed and uniform brood sex ratio strategy in turtles: the facts, the theory and their consequences. Biology of turtles. J. Wyneken, V. Bels and M. H. Godfrey. Chigaco, IL, University Press of Chicago: 279-300.




Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NWG, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai HS, Mammadov J, del Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MAS, Young ND (2008). Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiology 148(4): 1740-1759.


Jabbour F, Damerval C, Nadot S (2008). Evolutionary trends in the flowers of Asteridae. Is polyandry an alternative to zygomorphy? Annals of Botany 102: 153-165.


Jabbour F, Nadot S, Damerval C (2008). Evolution of floral symmetry: a state of the art. Comptes Rendus Biologie 332: 219-231.


Kondorosi E, Alunni B, Kevei Z, Maunoury N, Van de Velde W, Mergaert P, Kondorosi A (2008). Bacteroid Differenciation Is Linked to Evolution of High Diversity of Secreted Peptides in the Host Plant. Current Plant Science and Biotechnology in Agriculture : Biological Nitrogen Fixation: Towards Poverty Alleviation through Sustainable Agriculture,. S. B. M. C. F. Dakora, A.J. Valentine, C. Elmerich and W.E. Newton, Springer. 42: 177-180.


Krieger-Liszkay A, Fufezan C, Trebst A (2008). Singlet oxygen production in photosystem II and related protection mechanism. Photosynthesis Research 98: 551-564.


Latrasse D, Benhamed M, Henry Y, Domenichini S, Kim W, Zhou D, Delarue M (2008). The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis. BMC Plant Biol 8: 121.


Le Foll M, Blanchet S, Millan L, Mathieu C, Bergounioux C, Glab N (2008). The plant CDK inhibitor NtKIS1a interferes with dedifferentiation, is specifically down regulated during development and interacts with a JAB1 homolog. Plant Science 175: 513-23.


Le Hir R, Béneteau J, Bellini C, Vilaine F, Dinant S (2008). Transcriptomics data: keys for investigating phloem functions. Trends in Plance Sciences 13: 273-280.


Leroux P, Bach J, Debieu D, Fillinger S, Fritz R, Walker A-S (2008). Mode of action of sterol biosynthesis inhibitors and resistance phenomena in fungi. Modern Fungicides and Antifungal Compounds. H. W. Dehne, H. B. Deising, U. Gisiet al. V: 85-92.


Liu W, Leroux P, Fillinger S (2008). The HOG1-like MAP kinase Sak1 of Botrytis cinerea is negatively regulated by the upstream histidine kinase Bos1 and is not involved in dicarboximide- and phenylpyrrole resistance. Fungal Genetics and Biology 45: 1062-1074.


Lohmiller L, De Muyt A, Howard B, Offenberg H, Heyting C, Grelon M, Anderson L (2008). Cytological analysis of Mre11 protein during early meiotic prophase I in Arabidopsis and tomato. Chromosoma 117: 277-288.


Macaisne N, Novatchkova M, Peirera L, Vezon D, Jolivet S, Froger N, Chelysheva L, Grelon M, Mercier R (2008). SHOC1, an XPF endonuclease-related protein, is essential for the formation of class I meiotic crossovers. Current Biology 18: 1432-1437.


Marion J, Bach L, Bellec Y, Meyer C, Gissot L, Faure J-D (2008). Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant Journal 56: 169-179.


Martinez A, Traverso J, Valot B, Ferro M, Espagne C, Ephritikhine G, Zivy M, Giglione C, Meinnel T (2008). Extent of N-Terminal Modifications in Cytosolic Proteins from Eukaryotes. Proteomics 8: 2809-2831.


Mercier R, Jolivet S, Vignard J, Durand S, Drouaud J, Pelletier G, Nogue F (2008). Outcrossing as an explanation of the apparent unconventional genetic behaviour of Arabidopsis thaliana hth mutants. Genetics 180: 2295-2297.


Merigout P, Gaudon V, Quillere I, Briand  X, Daniel-Vedele F (2008). Urea use efficiency of hydroponically grown maize and wheat plants. Journal of Plant Nutrition 31: 427-443.


Merigout P, Lelandais M, Bitton F, Renou J, Briand X, Meyer C, Daniel-Vedele F (2008). Physiological and transcriptomic aspects of urea uptake and assimiltion in Arabidopsis plantsPlant Physiology 147: 1125-1138.


Mir Derikvand M, Sierra JB, Ruel K, Pollet B, Do C-T, Thevenin J, Buffard D, Jouanin L, Lapierre C (2008). Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1. Planta 227: 943-956.


Nadot S, Furness C, Sannier J, Penet L, Triki-Teurtroy S, Albert B, Ressayre A (2008). Phylogenetic comparative analysis of microsporogenesis in angiosperms with a focus on monocotsAmerican Journal of Botany 95: 1426-1436.


Oliveira Ribeiro CA, Vollaire Y, Coulet E, Roche H (2008). Bioaccumulation of polychlorinated biphenyls in the eel (Anguilla anguilla) at the Camargue Nature Reserve - France. Environmental Pollution 153: 424-431.


Pivard S, Adamczyk K, Lecomte J, Lavigne C, Bouvier A, Deville A, Gouyon P, Huet S (2008). Where do the feral oilseed rape populations come from? A large-scale study of their possible origin in a farmland area. Journal of Applied Ecology 45: 476-485.


Pivard S, Demsar D, Lecomte J, Debeljak M, Dzeroski S (2008). Characterizing the presence of oilseed rape feral populations on field margins using machine learning. Ecological Modelling 212: 147-154.


Polge C, Jossier M, Crozet P, Gissot L, Thomas M (2008). Beta subunits of the SnRK1 complexes share a common ancestral function together with expression and function specificities; physical interaction with nitrate reductase specifically occurs via AKINbeta1 subunit. Plant Physiology 148: 1570-1582.


Queval G, Hager J, Gakière B, Noctor G (2008). Why are literature data for H2O2 contents so variable? A discussion of potential difficulties in quantitative assays of leaf extracts. Journal of Experimental Botany 59: 135-146.


Ragni L, Belles-Boix E, Guenl M, Pautot V (2008). Interaction of KNAT6 and KNAT2 with BREVIPEDICELLUS and PENNYWISE in Arabidopsis inflorescences. Plant Cell 20: 888-900.


Ralph J, Kim H, Lu F, Grabber JH, Leple J-C, Berrio-Sierra J, Derikvand MM, Jouanin L, Boerjan W, Lapierre C (2008). Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency). Plant Journal 53: 368-379.


Raman S, Greb T, Peaucelle A, Blein T, Laufs P, Theres K (2008). Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana. Plant Journal 55: 65-76.


Remy E, Meyer M, Blaise F, Chabirand M, Wolff N, Balesdent MH, Rouxel T (2008). The Lmpma1 gene of Leptosphaeria maculans encodes a plasma membrane H+-ATPase isoform essentialfor pathogenicity towards oilseed rape. Fungal Genetics and Biology 45: 1122-1134


Remy E, Meyer M, Blaise  F, Simon U, Kuhn D, Chabirand M, Riquelme M, Balesdent M, Rouxel T (2008). The Lmgpi15 gene, encoding a component of the glycosylphosphatidylinositol anchor biosynthesis pathway, is required for morphogenesis and pathogenicity in Leptosphaeria maculans. New Phytologist 179: 1105-1120


Salvaudon L, Giraud T, Shykoff JA (2008). Genetic diversity in natural populations: a fundamental component of plant-microbe interactions. Current Opinion in Plant Biology 11(2): 135-143.


Salvaudon L, Héraudet V, Shykoff JA (2008). Arabidopsis thaliana and the Robin Hood parasite: a chivalrous oomycete that steals fitness from fecund hosts and benefits the poorest one? Biology Letters 4(5): 526-529.


Santos-Mendoza M, Dubreucq B, Baud S, Parcy F, Caboche M, Lepiniec L (2008). Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis. Plant Journal 54: 608-620.


Schopfer P, Heyno E, Drepper F, Krieger-Liszkay A (2008). Naphthoquinone-dependent generation of superoxide radicals by quinone reductase isolated from the plasma membrane of soybean. Plant Physiology 147: 864-878.


Servet C, Benhamed M, Latrasse D, Kim W, Delarue M, Zhou D (2008). Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Biochimica Biophysica Acta 1779: 376-382.


Teillac-Deschamps P, Delmas V, Lorrillière R, Servais V, Cadi A, Prévot-Julliard A-C (2008). Red-eared slider turtles (Trachemys scripta elegans) introduced to french urban wetlands: an integrated research and conservation program. Urban Herpetology. Herpetological Conservation. R. E. Jung and J. C. Mitchell. Salt Lake City, UT, Society for the Study of Amphibians and Reptiles. 3.


Truernit E, Bauby H, Dubreucq B, Grandjean O, Runions J, Barthelemy J, Palauqui J-C (2008). High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of phloem development and structure in Arabidopsis. Plant Cell 20: 1494-1503.


Uyttewaal M, Arnal N, Quadrado M, Martin-Canadell A, Vrielynck N, Hiard S, Gherbi H, Bendahmane A, Budar F, Mireau H (2008). Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility. Plant Cell 20: 3331-3345.


Uyttewaal M, Mireau H, Rurek M, Hammani K, Giegé P (2008). PPR336 is associated to polysomes in plant mitochondria. Journal of Molecular Biology 375: 626-636.


Wawrzynski A, Ashfield T, Chen NWG, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, Chacko B, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Howell S, Ilut D, Lai HS, del Campo SM, Metcalf M, O'Bleness M, Pfeil BE, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Tucker DM, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MAS, Young ND, Innes RW (2008). Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiology 148: 1760-1771.


Zaffagnini M, Michelet L, Massot V, Trost P, Lemaire S (2008). Biochemical characterization of glutaredoxins from Chlamydomonas reinhardtii reveals the unique properties of a chloroplastic CGFS-type glutaredoxin. Journal of Biochemical Chemistry 83: 8868-8876.